Commits · 2173f20aa713f17a1565de8187b987556b201d16 · ESB / ONT_pilot_gitlab · GitLab

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Jun 09, 2020
- Merge branch 'checkpoint_snakefile' into 'master' · 2173f20a
  Valentina Galata authored 4 years ago
  
  # Conflicts: # .gitignore # config/CONFIG.yaml
  2173f20a
- Merge branch 'figs_vg' into 'master' · 2389917f
  Susheel Busi authored 4 years ago
  
  Add latest figure updates See merge request susheel.busi/ont_pilot_gitlab!70
  2389917f
- crispr data/fig: filter casc results (issue #19 ) · a12b69cc
  Valentina Galata authored 4 years ago
  
  a12b69cc
- crispr fig: num of spacers/arrays per assembly; contig intersections (issue #19 ) · 25b450c3
  Valentina Galata authored 4 years ago
  
  25b450c3
Jun 08, 2020
- updated rule to collect CRISPR data (issue #19 ); added figures/src/utils.py · 1990f776
  Valentina Galata authored 4 years ago
  
  1990f776
- updated .gitignore: ignore __pycache__/ · 845ab336
  Valentina Galata authored 4 years ago
  
  845ab336
Jun 04, 2020
- Merge branch 'figures_valentina' into 'master' · 0e08c8a7
  Susheel Busi authored 4 years ago
  
  Figures valentina See merge request susheel.busi/ont_pilot_gitlab!68
  0e08c8a7
- rgi figure: intersection plots (issue #31 ) · 56236664
  Valentina Galata authored 4 years ago
  
  56236664
- rgi figure: added hit type - all/strict/nudged (issue #31 ) · 11e4adbd
  Valentina Galata authored 4 years ago
  
  11e4adbd
- comment update in fig_plasflow.R · ed791a47
  Valentina Galata authored 4 years ago
  
  ed791a47
- rgi figure: rm legend (issue #31 ) · c4b33d4e
  Valentina Galata authored 4 years ago
  
  c4b33d4e
- added rgi figure (issue #31 ) · c9726ad4
  Valentina Galata authored 4 years ago
  
  c9726ad4
- added plasflow figure (issue #30 ) · 5cd1eb18
  Valentina Galata authored 4 years ago
  
  5cd1eb18
- changed name of main conda env · d9061116
  Valentina Galata authored 4 years ago
  
  d9061116
Jun 03, 2020
- Merge branch 'checkpoint_snakefile_VG' into 'checkpoint_snakefile' · 1a42ca25
  Susheel Busi authored 4 years ago
  
  Add PlasFlow and RGI See merge request susheel.busi/ont_pilot_gitlab!69
  1a42ca25
- config/import clean-up · ac10becd
  Valentina Galata authored 4 years ago
  
  ac10becd
- config/import clean-up · 00d122a1
  Valentina Galata authored 4 years ago
  
  00d122a1
- config/import clean-up: taxonomy · 39b63d3e
  Valentina Galata authored 4 years ago
  
  39b63d3e
- config/import clean-up: plot · be7ed38b
  Valentina Galata authored 4 years ago
  
  be7ed38b
- config/import clean-up: mmseq · fb908557
  Valentina Galata authored 4 years ago
  
  fb908557
- config/import clean-up: metaT · e45e1d93
  Valentina Galata authored 4 years ago
  
  e45e1d93
- config/import clean-up: mapping · a4b878ef
  Valentina Galata authored 4 years ago
  
  a4b878ef
- config/import clean-up: checkpoint assembly annotation · 5db187d4
  Valentina Galata authored 4 years ago
  
  5db187d4
- config/import clean-up: binning · 2f3f06fd
  Valentina Galata authored 4 years ago
  
  2f3f06fd
- config/import clean-up: binning · 3b6ed7ed
  Valentina Galata authored 4 years ago
  
  3b6ed7ed
- config/import clean-up: assembly annotation · 4bc62cb2
  Valentina Galata authored 4 years ago
  
  4bc62cb2
- config/import clean-up: assembly annotation · 3ae1c1cc
  Valentina Galata authored 4 years ago
  
  3ae1c1cc
- config/import clean-up: analysis · c574d4e1
  Valentina Galata authored 4 years ago
  
  c574d4e1
- config/import clean-up: analysis · 1e8401ff
  Valentina Galata authored 4 years ago
  
  1e8401ff
- made FAA temp in rgi input rules; other minor changes (issue #29 ) · 2ab9da0b
  Valentina Galata authored 4 years ago
  
  2ab9da0b
- added rgi (issue #29 ) · 5a7350e8
  Valentina Galata authored 4 years ago
  
  5a7350e8
- added .gitignore · 69406c10
  Valentina Galata authored 4 years ago
  
  69406c10
- added plasflow (issue #28 ): includes important updates of config and snakemake files · 32df69ba
  Valentina Galata authored 4 years ago
  
  32df69ba
Jun 02, 2020
- Merge branch 'figures_valentina' of... · 9108bfe6
  Valentina Galata authored 4 years ago
  
  Merge branch 'figures_valentina' of ssh://git-r3lab-server.uni.lu:8022/susheel.busi/ont_pilot_gitlab into figures_valentina
  9108bfe6
- updated .gitignore to ignore removed files (nanostats/crispr summary; issue #27 ) · 4de01b3b
  Valentina Galata authored 4 years ago
  
  4de01b3b
- rm nanostats and crispr data files in figures/data (issue #27 ) · f25b256b
  Valentina Galata authored 4 years ago
  
  f25b256b
- Add new file · 5bb54bf8
  Susheel Busi authored 4 years ago
  
  5bb54bf8
- added crispr fig (issue #19 ) · d75c0381
  Valentina Galata authored 4 years ago
  
  d75c0381
- updated rule for nanostats summary (issue #18 ); rule for crispr summary (issue #19 ) · 629dc3fc
  Valentina Galata authored 4 years ago
  
  629dc3fc
- added nanostats fig (issue #18 ) · bc7c5db7
  Valentina Galata authored 4 years ago
  
  bc7c5db7