Commits · 5feedaabc626a0906751d8c88d91825dcff58e33 · ESB / ONT_pilot_gitlab · GitLab

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Jun 09, 2020
- mv rule files · 697cb518
  Valentina Galata authored 4 years ago
  
  697cb518
- made all non-script files not executable; scripts are only executable by user and group · c372fce1
  Valentina Galata authored 4 years ago
  
  c372fce1
- mv workflows/rules/scripts/env/config/src from 2019_GDB · d4e02299
  Valentina Galata authored 4 years ago
  
  d4e02299
Jun 03, 2020
- config/import clean-up · ac10becd
  Valentina Galata authored 4 years ago
  
  ac10becd
- config/import clean-up: analysis · c574d4e1
  Valentina Galata authored 4 years ago
  
  c574d4e1
- config/import clean-up: analysis · 1e8401ff
  Valentina Galata authored 4 years ago
  
  1e8401ff
- made FAA temp in rgi input rules; other minor changes (issue #29 ) · 2ab9da0b
  Valentina Galata authored 4 years ago
  
  2ab9da0b
- added rgi (issue #29 ) · 5a7350e8
  Valentina Galata authored 4 years ago
  
  5a7350e8
- added plasflow (issue #28 ): includes important updates of config and snakemake files · 32df69ba
  Valentina Galata authored 4 years ago
  
  32df69ba
May 30, 2020
- Update ANALYSIS_RULES · b40e3bfb
  Susheel Busi authored 4 years ago
  
  b40e3bfb
- removing the date flag from CASC shell due to errors · aeb752cd
  Susheel Busi authored 4 years ago
  
  aeb752cd
- fixed the path for the minced_CRISPR_output.txt file, and also fixed the CASC issue · e98663ed
  Susheel Busi authored 4 years ago
  
  e98663ed
- included calling the date in the shell · 43c3dfab
  Susheel Busi authored 4 years ago
  
  43c3dfab
- edited the ANALYSIS_RULES for running CASC · 88ef1d4d
  Susheel Busi authored 4 years ago
  
  88ef1d4d
- fixed my (SSB) silly typos - facepalming · 1735ea0d
  Susheel Busi authored 4 years ago
  
  1735ea0d
- edited the to fix the snakemake error - try # 14 million and one · 51c5727f
  Susheel Busi authored 4 years ago
  
  51c5727f
- cleaned up path exporting for rule/ANALYSIS_RULES and added to the config/CONFIG.yaml file · 2717c181
  Susheel Busi authored 4 years ago
  
  2717c181
May 29, 2020
- Update ANALYSIS_RULES · 66e8779c
  Susheel Busi authored 4 years ago
  
  66e8779c
- Update ANALYSIS_RULES · 0be55987
  Susheel Busi authored 4 years ago
  
  0be55987
- Update ANALYSIS_RULES · 12b0f875
  Susheel Busi authored 4 years ago
  
  12b0f875
- Update ANALYSIS_RULES · 4cc16794
  Susheel Busi authored 4 years ago
  
  4cc16794
- Update ANALYSIS_RULES · 6e343c4d
  Susheel Busi authored 4 years ago
  
  6e343c4d
May 28, 2020
- added the CRISPR related environments, rules and modified the workflows and... · f0e70006
  Susheel Busi authored 4 years ago
  
  added the CRISPR related environments, rules and modified the workflows and updated_SNAKEFILE accordingly
  f0e70006
- added rules for mappability_index and estimating unique_mapped_reads from BAM files · 9cdb8210
  Susheel Busi authored 4 years ago
  
  9cdb8210
May 15, 2020
- created new ANALYSIS_RULES and workflow for incorporating the cd-hit and quast analyses · 0b5d4048
  Susheel Busi authored 4 years ago
  
  0b5d4048