Commits · b963794df75c2cbfa16f31e05fc0d84dac4fc9a8 · ESB / ONT_pilot_gitlab · GitLab

Snippets Groups Projects

Nov 19, 2020
- report: updated report code (NOT finished) · b963794d
  Valentina Galata authored 4 years ago
  
  b963794d
Nov 18, 2020
- report: updated report code (NOT finished) · 10ffad74
  Valentina Galata authored 4 years ago
  
  10ffad74
- report: next update (NOT finished) · d22c2894
  Valentina Galata authored 4 years ago
  
  d22c2894
Nov 17, 2020
- report: updated report code (NOT finished) · 9f73aaae
  Valentina Galata authored 4 years ago
  
  9f73aaae
Sep 16, 2020
- report: updated plots (mostly themes) · c48ede7b
  Valentina Galata authored 4 years ago
  
  c48ede7b
Sep 14, 2020
- report: updated cdhit plots (issue #84 ) · 6a0c99c5
  Valentina Galata authored 4 years ago
  
  6a0c99c5
- report: new cdhit summary and plots (issue #84 ); other minor changes · 9e197abd
  Valentina Galata authored 4 years ago
  
  9e197abd
Aug 21, 2020
- report: minor updates for the plots · b783d5d6
  Valentina Galata authored 4 years ago
  
  b783d5d6
Aug 18, 2020
- report: numbers of cdhit stats (table) · 2659ef18
  Valentina Galata authored 4 years ago
  
  2659ef18
Jul 31, 2020
- issue #73 : added barrnap conda yaml; report: barrnap figure · 24f2c2bc
  Valentina Galata authored 4 years ago
  
  24f2c2bc
- analysis/report: mash on reads (issue #58 ); minor formatting changes · ce573af6
  Valentina Galata authored 4 years ago
  
  ce573af6
Jul 30, 2020
- report: added gene length distribution plots (issue #71 ) · 7cda6761
  Valentina Galata authored 4 years ago
  
  7cda6761
- report: diamond: query and subject coverage, other updates (issue #69 ) · 7f7d5f37
  Valentina Galata authored 4 years ago
  
  7f7d5f37
Jul 24, 2020
- report update · d1e53f46
  Valentina Galata authored 4 years ago
  
  d1e53f46
Jul 22, 2020
- report update (incl metat polished assemblies) (issue #52 ) · 680d8114
  Valentina Galata authored 4 years ago
  
  680d8114
Jul 20, 2020
- report: added diamond density plot · 3bf391ef
  Valentina Galata authored 4 years ago
  
  3bf391ef
Jul 13, 2020
- report: added mash figure (ssiue #59 ) · 9356b17e
  Valentina Galata authored 4 years ago
  
  9356b17e
Jul 09, 2020
- report: exclude metat if no data provided · 8e79f28c
  Valentina Galata authored 4 years ago
  
  8e79f28c
Jul 02, 2020
- report: cdhit figure; rm not used/old scripts · 3472b20a
  Valentina Galata authored 4 years ago
  
  3472b20a
- report: diamond: fig w/o log10 and zoomed in (issue #22 ) · a19c935c
  Valentina Galata authored 4 years ago
  
  a19c935c
- report: update for diamond/prodigal figures · d935fc15
  Valentina Galata authored 4 years ago
  
  d935fc15
- report: added total/partial gene counts (prodigal) (issue #50 ) · 347a86b8
  Valentina Galata authored 4 years ago
  
  347a86b8
- report: diamond query/subject length ratio (issue #22 ) · d876006c
  Valentina Galata authored 4 years ago
  
  d876006c
Jul 01, 2020
- report: added mappability (issue #23 and #27 ) · 19388d73
  Valentina Galata authored 4 years ago
  
  19388d73
- report: added mappability (flagstat) (issue #27 , issue #23 ) · 75c540bc
  Valentina Galata authored 4 years ago
  
  75c540bc
- report: added crispr (issue #27 ) · 856b1e56
  Valentina Galata authored 4 years ago
  
  856b1e56
Jun 30, 2020
- renamed report/ into workflow_report/ · 07f363a3
  Valentina Galata authored 4 years ago
  
  07f363a3
- added rgi to the report (issue #27 ) · 3838040f
  Valentina Galata authored 4 years ago
  
  3838040f
- added quast and plasflow to report (issue #27 ) · f6e245e7
  Valentina Galata authored 4 years ago
  
  f6e245e7
Jun 25, 2020
- report: initial setup · 46662031
  Valentina Galata authored 4 years ago
  
  46662031